AMTR_s00048p00165750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.120

Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec23 component


Gene families : OG_01_0001193 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001193_tree ,
OG_02_0001066 (LandPlants) Phylogenetic Tree(s): OG_02_0001066_tree ,
OG_03_0002598 (SeedPlants) Phylogenetic Tree(s): OG_03_0002598_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00165750
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
AT2G21630 No alias Sec23/Sec24 protein transport family protein 0.04 Archaeplastida
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 Archaeplastida
LOC_Os08g36994.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
LOC_Os08g36994.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 LandPlants
AT2G21630 No alias Sec23/Sec24 protein transport family protein 0.02 SeedPlants
LOC_Os08g36994.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 124 390
IPR006895 Znf_Sec23_Sec24 54 92
IPR006900 Sec23/24_helical_dom 521 621
IPR007123 Gelsolin-like_dom 634 720
IPR012990 Sec23_24_beta_S 401 506
No external refs found!