AMTR_s00048p00066880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.27

Description : Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana


Gene families : OG_01_0002913 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002913_tree ,
OG_02_0002645 (LandPlants) Phylogenetic Tree(s): OG_02_0002645_tree ,
OG_03_0007919 (SeedPlants) Phylogenetic Tree(s): OG_03_0007919_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00066880
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cre01.g018900 No alias No description available 0.02 Archaeplastida
LOC_Os02g46740.1 No alias E3 ubiquitin ligase (ARA54) 0.02 Archaeplastida
LOC_Os04g50730.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Smo141959 No alias Probable E3 ubiquitin-protein ligase ARI10... 0.02 Archaeplastida
LOC_Os04g50730.1 No alias no hits & (original description: none) 0.01 LandPlants
Smo141959 No alias Probable E3 ubiquitin-protein ligase ARI10... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002867 IBR_dom 547 584
IPR002867 IBR_dom 447 505
IPR006575 RWD-domain 180 319
No external refs found!