AMTR_s00048p00053570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.18

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor


Gene families : OG_01_0003962 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003962_tree ,
OG_02_0005807 (LandPlants) Phylogenetic Tree(s): OG_02_0005807_tree ,
OG_03_0006787 (SeedPlants) Phylogenetic Tree(s): OG_03_0006787_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00053570
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.11 Archaeplastida
Cpa|evm.model.tig00000704.61 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Cre07.g344050 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.04 Archaeplastida
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.09 Archaeplastida
MA_10601g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_566936g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.06 Archaeplastida
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.1 Archaeplastida
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.06 Archaeplastida
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.06 Archaeplastida
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.08 Archaeplastida
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.11 LandPlants
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 LandPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.03 LandPlants
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.08 LandPlants
MA_566936g0010 No alias no hits & (original description: none) 0.03 LandPlants
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.05 LandPlants
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.1 LandPlants
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 LandPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.06 LandPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.06 LandPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.08 LandPlants
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.11 SeedPlants
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 SeedPlants
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.03 SeedPlants
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.08 SeedPlants
MA_566936g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.06 SeedPlants
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.06 SeedPlants
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 531 566
IPR001680 WD40_repeat 179 216
IPR001680 WD40_repeat 390 429
IPR001680 WD40_repeat 613 650
IPR001680 WD40_repeat 53 88
IPR001680 WD40_repeat 135 174
IPR001680 WD40_repeat 489 523
IPR001680 WD40_repeat 439 472
IPR001680 WD40_repeat 93 130
IPR001680 WD40_repeat 570 607
IPR013934 SSU_processome_Utp13 672 805
No external refs found!