AMTR_s00048p00053570 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.18

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor

Gene families : OG_01_0003962 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003962_tree ,
OG_02_0005807 (LandPlants) Phylogenetic Tree(s): OG_02_0005807_tree ,
OG_03_0006787 (SeedPlants) Phylogenetic Tree(s): OG_03_0006787_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00053570
Cluster	HCCA: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
AT5G16750	TOZ	Transducin family protein / WD-40 repeat family protein	0.11	Archaeplastida
Cpa\|evm.model.tig00000704.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Cre07.g344050	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
GSVIVT01024351001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
Gb_13772	No alias	SSU processome assembly factor (TOZ)	0.04	Archaeplastida
LOC_Os04g50660.1	No alias	SSU processome assembly factor (TOZ)	0.09	Archaeplastida
MA_10601g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_566936g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp8g08070.1	No alias	SSU processome assembly factor (TOZ)	0.06	Archaeplastida
Pp3c19_12460V3.1	No alias	Transducin family protein / WD-40 repeat family protein	0.1	Archaeplastida
Smo80645	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Solyc03g097160.4.1	No alias	SSU processome assembly factor (TOZ)	0.06	Archaeplastida
Zm00001e007090_P001	No alias	SSU processome assembly factor (TOZ)	0.06	Archaeplastida
Zm00001e041546_P002	No alias	SSU processome assembly factor (TOZ)	0.08	Archaeplastida
AT5G16750	TOZ	Transducin family protein / WD-40 repeat family protein	0.11	LandPlants
GSVIVT01024351001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	LandPlants
Gb_13772	No alias	SSU processome assembly factor (TOZ)	0.03	LandPlants
LOC_Os04g50660.1	No alias	SSU processome assembly factor (TOZ)	0.08	LandPlants
MA_566936g0010	No alias	no hits & (original description: none)	0.03	LandPlants
Mp8g08070.1	No alias	SSU processome assembly factor (TOZ)	0.05	LandPlants
Pp3c19_12460V3.1	No alias	Transducin family protein / WD-40 repeat family protein	0.1	LandPlants
Smo80645	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	LandPlants
Solyc03g097160.4.1	No alias	SSU processome assembly factor (TOZ)	0.06	LandPlants
Zm00001e007090_P001	No alias	SSU processome assembly factor (TOZ)	0.06	LandPlants
Zm00001e041546_P002	No alias	SSU processome assembly factor (TOZ)	0.08	LandPlants
AT5G16750	TOZ	Transducin family protein / WD-40 repeat family protein	0.11	SeedPlants
GSVIVT01024351001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	SeedPlants
Gb_13772	No alias	SSU processome assembly factor (TOZ)	0.03	SeedPlants
LOC_Os04g50660.1	No alias	SSU processome assembly factor (TOZ)	0.08	SeedPlants
MA_566936g0010	No alias	no hits & (original description: none)	0.03	SeedPlants
Solyc03g097160.4.1	No alias	SSU processome assembly factor (TOZ)	0.06	SeedPlants
Zm00001e007090_P001	No alias	SSU processome assembly factor (TOZ)	0.06	SeedPlants
Zm00001e041546_P002	No alias	SSU processome assembly factor (TOZ)	0.08	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	531	566
IPR001680	WD40_repeat	179	216
IPR001680	WD40_repeat	390	429
IPR001680	WD40_repeat	613	650
IPR001680	WD40_repeat	53	88
IPR001680	WD40_repeat	135	174
IPR001680	WD40_repeat	489	523
IPR001680	WD40_repeat	439	472
IPR001680	WD40_repeat	93	130
IPR001680	WD40_repeat	570	607
IPR013934	SSU_processome_Utp13	672	805

External Links

No external refs found!

AMTR_s00048p00053570 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation