AMTR_s00048p00046670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.15

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG_01_0000057 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000057_tree ,
OG_02_0000448 (LandPlants) Phylogenetic Tree(s): OG_02_0000448_tree ,
OG_03_0009042 (SeedPlants) Phylogenetic Tree(s): OG_03_0009042_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00046670
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00254310 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 Archaeplastida
AMTR_s00056p00132920 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00090p00165440 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 Archaeplastida
AT1G02520 PGP11 P-glycoprotein 11 0.03 Archaeplastida
AT1G27940 PGP13 P-glycoprotein 13 0.05 Archaeplastida
AT4G25960 PGP2 P-glycoprotein 2 0.03 Archaeplastida
GSVIVT01021366001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Gb_13906 No alias subfamily ABCB transporter 0.04 Archaeplastida
LOC_Os02g46680.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
LOC_Os04g38570.1 No alias auxin efflux transporter (ABCB19) 0.03 Archaeplastida
MA_126766g0010 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_934204g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
Mp2g06270.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Mp2g11920.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Pp3c1_31680V3.1 No alias ABC transporter family protein 0.03 Archaeplastida
Pp3c21_18190V3.1 No alias ATP binding cassette subfamily B19 0.05 Archaeplastida
Smo230688 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
Smo233433 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo419451 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Solyc03g093650.3.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc08g076720.4.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc11g067310.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e006786_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023274_P001 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e041008_P003 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 Archaeplastida
AMTR_s00010p00254310 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 LandPlants
AT1G27940 PGP13 P-glycoprotein 13 0.06 LandPlants
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.02 LandPlants
AT3G28860 ABCB19,... ATP binding cassette subfamily B19 0.02 LandPlants
AT4G25960 PGP2 P-glycoprotein 2 0.03 LandPlants
Gb_13906 No alias subfamily ABCB transporter 0.04 LandPlants
LOC_Os02g46680.1 No alias subfamily ABCB transporter 0.05 LandPlants
LOC_Os04g38570.1 No alias auxin efflux transporter (ABCB19) 0.03 LandPlants
MA_126766g0010 No alias subfamily ABCB transporter 0.05 LandPlants
Mp2g11920.1 No alias subfamily ABCB transporter 0.03 LandPlants
Pp3c1_7210V3.1 No alias ATP binding cassette subfamily B19 0.01 LandPlants
Smo230688 No alias Solute transport.primary active transport.ABC... 0.05 LandPlants
Solyc08g076720.4.1 No alias subfamily ABCB transporter 0.04 LandPlants
Zm00001e023274_P001 No alias subfamily ABCB transporter 0.03 LandPlants
Zm00001e041008_P003 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.02 LandPlants
AT4G25960 PGP2 P-glycoprotein 2 0.02 SeedPlants
Gb_13906 No alias subfamily ABCB transporter 0.04 SeedPlants
LOC_Os02g46680.1 No alias subfamily ABCB transporter 0.05 SeedPlants
MA_126766g0010 No alias subfamily ABCB transporter 0.04 SeedPlants
Solyc08g076720.4.1 No alias subfamily ABCB transporter 0.04 SeedPlants
Zm00001e023274_P001 No alias subfamily ABCB transporter 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006810 transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1054 1179
IPR003439 ABC_transporter-like 418 543
No external refs found!