MA_93495g0010


Description : 29.5.11.1 protein.degradation.ubiquitin.ubiquitin One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. polyubiquitin 10 (UBQ10)


Gene families : OG_01_0000152 (Gene family) Phylogenetic Tree(s): OG0000152_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_93495g0010
Cluster HCCA cluster: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
AT5G03240 UBQ3 polyubiquitin 3 0.02 Gene family
MA_100402g0010 No alias 29.5.11.1 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
Zm00001d053834 GRMZM2G118637,... 29.5.11.1 protein.degradation.ubiquitin.ubiquitin One of... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 303 339
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 3 74
No external refs found!