Gb_35052

Description : subfamily ABCB transporter

Gene families : OG_01_0001563 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001563_tree ,
OG_02_0007198 (LandPlants) Phylogenetic Tree(s): OG_02_0007198_tree ,
OG_03_0008022 (SeedPlants) Phylogenetic Tree(s): OG_03_0008022_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_35052
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00224320	evm_27.TU.AmTr_v1...	ABC transporter B family member 25 OS=Oryza sativa...	0.03	Archaeplastida
AT1G70610	ATTAP1, TAP1	transporter associated with antigen processing protein 1	0.03	Archaeplastida
MA_10428929g0010	No alias	ABC transporter B family member 26, chloroplastic...	0.03	Archaeplastida
Solyc12g070270.2.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e018873_P003	No alias	subfamily ABCB transporter	0.03	Archaeplastida
AT1G70610	ATTAP1, TAP1	transporter associated with antigen processing protein 1	0.03	LandPlants
Solyc12g070270.2.1	No alias	subfamily ABCB transporter	0.02	LandPlants
AT1G70610	ATTAP1, TAP1	transporter associated with antigen processing protein 1	0.03	SeedPlants
Solyc12g070270.2.1	No alias	subfamily ABCB transporter	0.02	SeedPlants
Zm00001e018873_P003	No alias	subfamily ABCB transporter	0.01	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	289	437
IPR011527	ABC1_TM_dom	6	219

External Links

No external refs found!

Gb_35052

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation