AMTR_s00047p00228170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00047.188

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG_01_0001563 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001563_tree ,
OG_02_0006377 (LandPlants) Phylogenetic Tree(s): OG_02_0006377_tree ,
OG_03_0007367 (SeedPlants) Phylogenetic Tree(s): OG_03_0007367_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00047p00228170
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT5G39040 ALS1, ATTAP2, TAP2 transporter associated with antigen processing protein 2 0.03 Archaeplastida
Cpa|evm.model.tig00021127.70 No alias ABC transporter B family member 25 OS=Oryza sativa... 0.01 Archaeplastida
Cpa|evm.model.tig00021434.18 No alias ABC transporter B family member 14 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre02.g083354 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
LOC_Os03g54790.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_814691g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
Smo441803 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Solyc03g114950.2.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e012019_P002 No alias subfamily ABCB transporter 0.03 Archaeplastida
AT5G39040 ALS1, ATTAP2, TAP2 transporter associated with antigen processing protein 2 0.03 LandPlants
LOC_Os03g54790.1 No alias subfamily ABCB transporter 0.04 LandPlants
Mp2g03180.1 No alias subfamily ABCB transporter 0.01 LandPlants
Smo441803 No alias Solute transport.primary active transport.ABC... 0.03 LandPlants
AT5G39040 ALS1, ATTAP2, TAP2 transporter associated with antigen processing protein 2 0.03 SeedPlants
LOC_Os03g54790.1 No alias subfamily ABCB transporter 0.04 SeedPlants
Zm00001e012019_P002 No alias subfamily ABCB transporter 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006810 transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 433 559
No external refs found!