Pnu_g26171 (ATPUB17, PUB17)

Aliases : ATPUB17, PUB17

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g26171

Target	Alias	Description	ECC score	Gene Family Method
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05159	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g09883	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g07408	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g08869	PUB15	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03880	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17483	PUB15	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g11561	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g32706	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g36575	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g40757	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02285	ATPUB17, PUB17	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03347	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g06975	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18007	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016225001	PUB14, ATPUB14	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01021265001	ATPUB17, PUB17	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
MA_5342g0010	PUB15	U-box domain-containing protein 12 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Msp_g01498	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09615	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g082440.4.1	PUB15, Solyc04g082440	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008373	sialyltransferase activity	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	410	448
IPR003613	Ubox_domain	277	348

External Links

No external refs found!

Pnu_g26171 (ATPUB17, PUB17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation