Pnu_g26126


Description : not classified & original description: none


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g26126
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Aev_g02287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.03 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.02 OrthoFinder output from all 47 species
Dcu_g02839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13534 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g06999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g16749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 185 242
IPR000504 RRM_dom 3 44
No external refs found!