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Pnu_g26021


Description : SSU processome assembly factor *(UTP12) & original description: none


Gene families : OG0005767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g26021
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Ceric.09G013500.1 Ceric.09G013500 SSU processome assembly factor *(UTP12) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g04071 No alias SSU processome assembly factor *(UTP12) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g06161 No alias SSU processome assembly factor *(UTP12) & original... 0.02 OrthoFinder output from all 47 species
Sam_g08051 No alias SSU processome assembly factor *(UTP12) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 663 700
IPR001680 WD40_repeat 583 615
IPR001680 WD40_repeat 150 184
IPR001680 WD40_repeat 104 142
IPR001680 WD40_repeat 74 100
IPR001680 WD40_repeat 405 439
IPR001680 WD40_repeat 485 520
IPR007148 SSU_processome_Utp12 803 902
No external refs found!