Gb_34767


Description : endoribonuclease (DCL3). endoribonuclease (DCL4)


Gene families : OG_01_0000221 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000221_tree ,
OG_02_0000940 (LandPlants) Phylogenetic Tree(s): OG_02_0000940_tree ,
OG_03_0003835 (SeedPlants) Phylogenetic Tree(s): OG_03_0003835_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_34767
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
AT3G43920 ATDCL3, DCL3 dicer-like 3 0.01 Archaeplastida
AT5G45150 RTL3 RNAse THREE-like protein 3 0.02 Archaeplastida
Cre02.g141000 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01019052001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
LOC_Os03g38740.1 No alias Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_118446g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.03 Archaeplastida
Mp1g02840.1 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 Archaeplastida
Pp3c1_24960V3.1 No alias dicer-like 1 0.02 Archaeplastida
Smo74321 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 Archaeplastida
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 LandPlants
GSVIVT01019052001 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 LandPlants
Mp1g02840.1 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 LandPlants
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.01 LandPlants
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 LandPlants
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.01 SeedPlants
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003100 PAZ_dom 949 1079
IPR011545 DEAD/DEAH_box_helicase_dom 83 244
IPR001650 Helicase_C 436 555
IPR000999 RNase_III_dom 1333 1445
IPR000999 RNase_III_dom 1121 1254
IPR005034 Dicer_dimerisation_dom 624 712
No external refs found!