AMTR_s00003p00079190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.45

Description : External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein


Gene families : OG_01_0000908 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000908_tree ,
OG_02_0000972 (LandPlants) Phylogenetic Tree(s): OG_02_0000972_tree ,
OG_03_0004471 (SeedPlants) Phylogenetic Tree(s): OG_03_0004471_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00079190
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030081001 No alias External stimuli response.light.red/far red light.PHY... 0.02 Archaeplastida
MA_6809g0010 No alias phytochrome photoreceptor (PHY) 0.05 Archaeplastida
MA_6809g0020 No alias phytochrome photoreceptor (PHY) 0.02 Archaeplastida
Solyc01g059870.4.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.04 Archaeplastida
GSVIVT01030081001 No alias External stimuli response.light.red/far red light.PHY... 0.01 LandPlants
Solyc01g059870.4.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.03 LandPlants
Solyc01g059870.4.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.02 SeedPlants
Zm00001e038324_P001 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
BP GO:0009584 detection of visible light IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0018298 protein-chromophore linkage IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013654 PAS_2 74 190
IPR003594 HATPase_C 1004 1107
IPR013767 PAS_fold 620 735
IPR013767 PAS_fold 751 870
IPR003661 HisK_dim/P 896 956
IPR003018 GAF 226 401
IPR013515 Phytochrome_cen-reg 412 588
No external refs found!