1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g25413

Pnu_g25413


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g25413

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00153500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
AMTR_s00089p00057120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Aev_g07265 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08301 No alias transcription factor *(CLAUSA) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09014 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20512 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g42445 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g07262 KAN2 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03462.t1 Aspi01Gene03462 transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65261.t1 Aspi01Gene65261 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.28G068700.1 Ceric.28G068700 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g31158 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04642 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g41240.1 LOC_Os05g41240 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os07g48596.1 LOC_Os07g48596 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g05409 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g06174 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
MA_138039g0010 KAN2 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
MA_6619111g0010 KAN, KAN1 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g18681 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Nbi_g02133 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g17637 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c23_8710V3.1 Pp3c23_8710 myb-like HTH transcriptional regulator family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012676 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo423935 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Solyc07g045000.4.1 Solyc07g045000 Putative Myb family transcription factor At1g14600... 0.02 OrthoFinder output from all 47 species
Spa_g09479 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e007059_P001 Zm00001e007059 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e015514_P001 KAN2, Zm00001e015514 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e023282_P002 KAN2, Zm00001e023282 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003873 6-phosphofructo-2-kinase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 8 58
IPR025756 Myb_CC_LHEQLE 89 135
No external refs found!