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  5. Pnu_g24350

Pnu_g24350


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g24350
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00177580 evm_27.TU.AmTr_v1... High mobility group B protein 9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ala_g02595 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cre13.g571050 No alias High mobility group B protein 9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ore_g29651 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Pir_g09599 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g52651 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Solyc01g100620.3.1 Solyc01g100620 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 460 525
IPR001606 ARID_dom 229 313
No external refs found!