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  5. Pnu_g23970

Pnu_g23970 (PKL, GYM, CHR6, SSL2, CHD3)


Aliases : PKL, GYM, CHR6, SSL2, CHD3

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g23970

Target Alias Description ECC score Gene Family Method Actions
Cba_g01315 CHR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017921001 ATCHR12 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
LOC_Os05g05230.1 ATCHR12, LOC_Os05g05230 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
Mp2g26680.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Ore_g26259 SYD, CHR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g20696 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010722_P005 ATCHR12, Zm00001e010722 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR009463 DUF1087 893 944
IPR009462 CHD_II_SANT-like 987 1117
IPR000330 SNF2_N 329 621
IPR001650 Helicase_C 651 758
IPR023780 Chromo_domain 154 183
IPR023780 Chromo_domain 219 266
IPR019787 Znf_PHD-finger 72 115
No external refs found!