Gb_32372


Description : pseudouridine synthase component Nap57/CBF5 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG_01_0004601 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004601_tree ,
OG_02_0004875 (LandPlants) Phylogenetic Tree(s): OG_02_0004875_tree ,
OG_03_0005456 (SeedPlants) Phylogenetic Tree(s): OG_03_0005456_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_32372
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.07 Archaeplastida
Cpa|evm.model.tig00000553.10 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
Cre03.g172950 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
GSVIVT01034188001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
MA_27456g0030 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 Archaeplastida
Mp4g12650.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 Archaeplastida
Pp3c22_210V3.1 No alias homologue of NAP57 0.05 Archaeplastida
Smo81986 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
Solyc02g081810.4.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 Archaeplastida
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.05 LandPlants
GSVIVT01034188001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 LandPlants
MA_27456g0030 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 LandPlants
Mp4g12650.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 LandPlants
Pp3c22_210V3.1 No alias homologue of NAP57 0.03 LandPlants
Smo81986 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 LandPlants
Solyc02g081810.4.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.08 LandPlants
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.05 SeedPlants
GSVIVT01034188001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 SeedPlants
MA_27456g0030 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 SeedPlants
Solyc02g081810.4.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032819 TruB_C 225 291
IPR002501 PsdUridine_synth_N 108 224
IPR012960 Dyskerin-like 47 104
IPR002478 PUA 295 367
No external refs found!