- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00008p00153950 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00008p00241920 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00016p00259690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g46460,... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00137550 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g36980,... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00172690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g37170... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00158010 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.01 | OrthoFinder output from all 47 species | |
| AMTR_s00084p00089150 | OTP86,... | Pentatricopeptide repeat-containing protein At3g63370,... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g003796 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g057717 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g087380 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g32783 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02416 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g26450 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Als_g06363 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07040 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07162 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Als_g07436 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g24197 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27260 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27296 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27561 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27846 | REME1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g28673 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g29683 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene02406.t1 | Aspi01Gene02406 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene20357.t1 | Aspi01Gene20357 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene21870.t1 | EMB2758, Aspi01Gene21870 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene27883.t1 | Aspi01Gene27883 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009022 | No alias | not classified & original description: CDS=1-2334 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009143 | No alias | not classified & original description: CDS=1-4677 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0012.g013040 | No alias | not classified & original description: CDS=1-1689 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0020.g015553 | OTP84 | not classified & original description: CDS=36-2027 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0117.g046573 | No alias | not classified & original description: CDS=1-1419 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0231.g059276 | No alias | not classified & original description: CDS=103-2055 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0233.g059378 | No alias | not classified & original description: CDS=1-1827 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0277.g061496 | No alias | not classified & original description: CDS=1-2121 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0652.g081079 | No alias | not classified & original description: CDS=1-2169 | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g03367 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29935 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g29991 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34331 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G024400.1 | Ceric.07G024400 | not classified & original description: pacid=50626298... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.09G032600.1 | Ceric.09G032600 | not classified & original description: pacid=50587514... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.14G067900.1 | CRR22, Ceric.14G067900 | not classified & original description: pacid=50634625... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.20G007900.1 | Ceric.20G007900 | not classified & original description: pacid=50566810... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.21G010300.1 | Ceric.21G010300 | not classified & original description: pacid=50603707... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g32259 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g32689 | CRR22 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g22846 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g47657 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g49826 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50518 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g16748 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g21131 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g26917 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Gb_00776 | No alias | Pentatricopeptide repeat-containing protein At5g50390,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g72049.1 | PTAC9, OSB2,... | ssDNA-binding protein (OSB). TAC9 cofactor of... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g44132 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06198 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06655 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07668 | OTP82 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07691 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g12447 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g35525 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10721g0010 | REME1 | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| MA_6329g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g20280 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g22760 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31269 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25278 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g23513 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63838 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g63864 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g04436 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g06218 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16162 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g22825 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30094 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g30311 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g05887 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g07557 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29308 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g48074 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53705 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g55046 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g56908 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0024.g009076 | No alias | not classified & original description: CDS=1-1737 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0066.g016088 | No alias | not classified & original description: CDS=1-1020 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0093.g019124 | No alias | not classified & original description: CDS=1-405 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0143.g022894 | No alias | not classified & original description: CDS=1-2625 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g26655 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g38969 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50108 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo136241 | EMB2758 | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | OrthoFinder output from all 47 species | |
| Smo83339 | CRR22 | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g009950.4.1 | Solyc09g009950 | RNA editing factor (MEF10) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g23549 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g27589 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55591 | CRR2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g04725 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g06120 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g23279 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g29865 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g30348 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e014800_P001 | OTP82, Zm00001e014800 | Pentatricopeptide repeat-containing protein At2g29760,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034478_P001 | Zm00001e034478 | Pentatricopeptide repeat-containing protein At3g24000,... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e039394_P003 | Zm00001e039394 | Pentatricopeptide repeat-containing protein At5g04780,... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 271 | 295 |
| IPR002885 | Pentatricopeptide_repeat | 472 | 496 |
| IPR046848 | E_motif | 515 | 569 |
| IPR002885 | Pentatricopeptide_repeat | 95 | 141 |
| IPR002885 | Pentatricopeptide_repeat | 298 | 345 |
| IPR002885 | Pentatricopeptide_repeat | 1 | 41 |
| IPR002885 | Pentatricopeptide_repeat | 398 | 445 |
| IPR002885 | Pentatricopeptide_repeat | 196 | 243 |
| No external refs found! |