AMTR_s00046p00171520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.94

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1)


Gene families : OG_01_0003806 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003806_tree ,
OG_02_0004351 (LandPlants) Phylogenetic Tree(s): OG_02_0004351_tree ,
OG_03_0004745 (SeedPlants) Phylogenetic Tree(s): OG_03_0004745_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00171520
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Zm00001e030463_P003 No alias formamidopyrimidine-DNA glycosylase (FPG1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA Interproscan
BP GO:0006284 base-excision repair IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012319 FPG_cat 2 132
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 146 236
No external refs found!