Pnu_g23416 (PNH, AGO10, ZLL)


Aliases : PNH, AGO10, ZLL

Description : not classified & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g23416

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171480 AGO7, ZIP,... Protein argonaute 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 OrthoFinder output from all 47 species
Aev_g23886 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58865 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Aop_g29550 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61220.t1 AGO1, Aspi01Gene61220 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g29067 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Len_g35246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21068 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Msp_g27281 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Sam_g08413 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Sam_g25176 No alias siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Smo109987 AGO1 Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
Spa_g09278 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12263 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030606_P001 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 70 117
IPR003100 PAZ_dom 2 60
IPR032473 Argonaute_Mid_dom 128 185
No external refs found!