Gb_31459


Description : pre-mRNA splicing regulator (DDX5)


Gene families : OG_01_0000695 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000695_tree ,
OG_02_0003605 (LandPlants) Phylogenetic Tree(s): OG_02_0003605_tree ,
OG_03_0003577 (SeedPlants) Phylogenetic Tree(s): OG_03_0003577_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31459
Cluster HCCA: Cluster_330

Target Alias Description ECC score Gene Family Method Actions
AT3G06480 No alias DEAD box RNA helicase family protein 0.03 Archaeplastida
LOC_Os01g68320.2 No alias pre-mRNA splicing regulator (DDX5) 0.04 Archaeplastida
Solyc03g112350.4.1 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Zm00001e016763_P001 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e020727_P006 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.02 Archaeplastida
LOC_Os01g68320.2 No alias pre-mRNA splicing regulator (DDX5) 0.04 LandPlants
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.02 LandPlants
AMTR_s00005p00263980 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 SeedPlants
LOC_Os01g68320.2 No alias pre-mRNA splicing regulator (DDX5) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 330 440
IPR011545 DEAD/DEAH_box_helicase_dom 124 293
No external refs found!