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  5. Pnu_g22439

Pnu_g22439


Description : not classified & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g22439
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Als_g13137 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Als_g13580 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Als_g44286 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Cba_g43569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.6 NFD2, HMG BETA... No description available 0.01 OrthoFinder output from all 47 species
Msp_g01263 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Msp_g38531 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g17368 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g27294 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g31468 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g36464 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 30 97
No external refs found!