Gb_31132


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002431 (SeedPlants) Phylogenetic Tree(s): OG_03_0002431_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_31132
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19220 ARF19, IAA22, ARF11 auxin response factor 19 0.04 Archaeplastida
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 Archaeplastida
AT5G60450 ARF4 auxin response factor 4 0.05 Archaeplastida
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os06g48950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_5089g0010 No alias Auxin response factor 7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_69854g0010 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c5_9420V3.1 No alias auxin response factor 2 0.02 Archaeplastida
Smo404004 No alias No description available 0.03 Archaeplastida
Solyc01g103050.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc06g075150.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc11g069500.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e023038_P001 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e030290_P005 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e032423_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.02 LandPlants
Pp3c5_9420V3.1 No alias auxin response factor 2 0.02 LandPlants
AMTR_s00034p00110140 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 800 833
IPR010525 Auxin_resp 260 342
IPR003340 B3_DNA-bd 134 235
No external refs found!