Gb_30392

Description : chromatin remodeling factor (SMARCAL1)

Gene families : OG_01_0005923 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005923_tree ,
OG_02_0009245 (LandPlants) Phylogenetic Tree(s): OG_02_0009245_tree ,
OG_03_0010620 (SeedPlants) Phylogenetic Tree(s): OG_03_0010620_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_30392
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.03	LandPlants
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002711	HNH	1078	1112
IPR000330	SNF2_dom	226	454
IPR001650	Helicase_C	554	655

External Links

No external refs found!