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  5. AMTR_s00045p00200960

AMTR_s00045p00200960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.260

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein


Gene families : OG_01_0002684 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002684_tree ,
OG_02_0008396 (LandPlants) Phylogenetic Tree(s): OG_02_0008396_tree ,
OG_03_0009562 (SeedPlants) Phylogenetic Tree(s): OG_03_0009562_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00200960
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00129550 evm_27.TU.AmTr_v1... Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 Archaeplastida
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.06 Archaeplastida
AT4G28740 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 Archaeplastida
Cre06.g266900 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 Archaeplastida
Cre10.g430150 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.05 Archaeplastida
LOC_Os04g42800.1 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 Archaeplastida
MA_173127g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 Archaeplastida
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 Archaeplastida
Mp1g21960.1 No alias LPA1 protein involved in PS-II assembly 0.02 Archaeplastida
Mp7g15330.1 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.05 Archaeplastida
Pp3c12_5470V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c17_23380V3.1 No alias tetratricopeptide repeat (TPR)-containing protein 0.07 Archaeplastida
Solyc09g074880.4.1 No alias No annotation 0.04 Archaeplastida
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.05 Archaeplastida
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 LandPlants
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 LandPlants
Gb_01636 No alias LPA1 protein involved in PS-II assembly 0.02 LandPlants
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.04 LandPlants
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 LandPlants
Mp1g21960.1 No alias LPA1 protein involved in PS-II assembly 0.02 LandPlants
Pp3c17_23380V3.1 No alias tetratricopeptide repeat (TPR)-containing protein 0.06 LandPlants
Solyc09g074880.4.1 No alias No annotation 0.04 LandPlants
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.04 LandPlants
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 SeedPlants
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 SeedPlants
Gb_01636 No alias LPA1 protein involved in PS-II assembly 0.02 SeedPlants
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.04 SeedPlants
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 SeedPlants
Solyc09g074880.4.1 No alias No annotation 0.04 SeedPlants
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR021883 LPA1-like 191 270
No external refs found!