AMTR_s00045p00200960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.260

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein


Gene families : OG_01_0002684 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002684_tree ,
OG_02_0008396 (LandPlants) Phylogenetic Tree(s): OG_02_0008396_tree ,
OG_03_0009562 (SeedPlants) Phylogenetic Tree(s): OG_03_0009562_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00200960
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00129550 evm_27.TU.AmTr_v1... Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 Archaeplastida
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.06 Archaeplastida
AT4G28740 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 Archaeplastida
Cre06.g266900 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 Archaeplastida
Cre10.g430150 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.05 Archaeplastida
LOC_Os04g42800.1 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 Archaeplastida
MA_173127g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.04 Archaeplastida
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.03 Archaeplastida
Mp1g21960.1 No alias LPA1 protein involved in PS-II assembly 0.02 Archaeplastida
Mp7g15330.1 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.05 Archaeplastida
Pp3c12_5470V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c17_23380V3.1 No alias tetratricopeptide repeat (TPR)-containing protein 0.07 Archaeplastida
Solyc09g074880.4.1 No alias No annotation 0.04 Archaeplastida
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.05 Archaeplastida
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 LandPlants
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 LandPlants
Gb_01636 No alias LPA1 protein involved in PS-II assembly 0.02 LandPlants
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.04 LandPlants
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 LandPlants
Mp1g21960.1 No alias LPA1 protein involved in PS-II assembly 0.02 LandPlants
Pp3c17_23380V3.1 No alias tetratricopeptide repeat (TPR)-containing protein 0.06 LandPlants
Solyc09g074880.4.1 No alias No annotation 0.04 LandPlants
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.04 LandPlants
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 SeedPlants
GSVIVT01027972001 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 SeedPlants
Gb_01636 No alias LPA1 protein involved in PS-II assembly 0.02 SeedPlants
LOC_Os01g25600.1 No alias LPA1 protein involved in PS-II assembly 0.04 SeedPlants
MA_8804338g0010 No alias Protein LOW PSII ACCUMULATION 1, chloroplastic... 0.02 SeedPlants
Solyc09g074880.4.1 No alias No annotation 0.04 SeedPlants
Zm00001e017629_P003 No alias LPA1 protein involved in PS-II assembly 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021883 LPA1-like 191 270
No external refs found!