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  5. Cpa|evm.model.tig00001532.12

Cpa|evm.model.tig00001532.12


Description : 29.2.1.2.2.9 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. PIGGYBACK2 (PGY2)


Gene families : OG_01_0002371 (Gene family) Phylogenetic Tree(s): OG0002371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cpa|evm.model.tig00001532.12
Cluster HCCA cluster: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AT1G33120 No alias Ribosomal protein L6 family 0.01 Gene family
AT1G33140 PGY2 Ribosomal protein L6 family 0.02 Gene family
AT4G10450 No alias Ribosomal protein L6 family 0.27 Gene family
Cre12.g494050 No alias 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.37 Gene family
GSVIVT01016795001 No alias 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.23 Gene family
GSVIVT01038670001 No alias 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.14 Gene family
LOC_Os02g01332 Os02g0103700 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.18 Gene family
LOC_Os09g31180 Os09g0485900 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.29 Gene family
MA_38141g0010 No alias 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.05 Gene family
Smo269009 PACid_15414070 No description available 0.16 Gene family
Solyc06g073310.3.1 Solyc06g073310.3 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.36 Gene family
Solyc12g096700.2.1 Solyc12g096700.2 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.36 Gene family
Zm00001d045578 GRMZM2G084739 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.07 Gene family
Zm00001d054084 No alias 29.2.1.2.2.9 protein.synthesis.ribosomal... 0.1 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan
CC GO:0005840 ribosome IEA InterProScan
BP GO:0006412 translation IEA InterProScan
MF GO:0019843 rRNA binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 24 69
IPR020040 Ribosomal_L6_a/b-dom 81 160
No external refs found!