AMTR_s00045p00153850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.165

Description : External stimuli response.light.red/far red light.PHY phytochrome photoreceptor


Gene families : OG_01_0000908 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000908_tree ,
OG_02_0000972 (LandPlants) Phylogenetic Tree(s): OG_02_0000972_tree ,
OG_03_0003182 (SeedPlants) Phylogenetic Tree(s): OG_03_0003182_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00153850
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021381001 No alias External stimuli response.temperature.temperature... 0.04 Archaeplastida
Pp3c16_20280V3.1 No alias phytochrome B 0.02 Archaeplastida
Pp3c25_2610V3.1 No alias phytochrome B 0.03 Archaeplastida
Smo161430 No alias External stimuli response.temperature.temperature... 0.04 Archaeplastida
AT1G09570 FHY2, HY8, PHYA, FRE1 phytochrome A 0.02 LandPlants
GSVIVT01021381001 No alias External stimuli response.temperature.temperature... 0.03 LandPlants
LOC_Os03g54084.1 No alias phytochrome photoreceptor (PHY) 0.01 LandPlants
Pp3c25_2610V3.1 No alias phytochrome B 0.03 LandPlants
LOC_Os03g54084.1 No alias phytochrome photoreceptor (PHY) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
BP GO:0009584 detection of visible light IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0018298 protein-chromophore linkage IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013767 PAS_fold 744 866
IPR013767 PAS_fold 614 728
IPR003594 HATPase_C 1000 1107
IPR013654 PAS_2 67 183
IPR013515 Phytochrome_cen-reg 406 582
IPR003018 GAF 216 394
IPR003661 HisK_dim/P 892 949
No external refs found!