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  5. Pnu_g20465

Pnu_g20465


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g20465

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Aob_g09698 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11391 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ceric.28G053600.1 Ceric.28G053600 ndhA-specific mRNA splicing factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g13798 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_35563 No alias ndhA-specific mRNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.05 OrthoFinder output from all 47 species
Ppi_g17511 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo109632 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.02 OrthoFinder output from all 47 species
Spa_g07815 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 520 564
IPR002885 Pentatricopeptide_repeat 423 452
IPR002885 Pentatricopeptide_repeat 318 346
IPR002885 Pentatricopeptide_repeat 349 396
IPR002885 Pentatricopeptide_repeat 244 289
IPR002885 Pentatricopeptide_repeat 455 501
IPR002885 Pentatricopeptide_repeat 174 223
No external refs found!