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  5. Pnu_g20088

Pnu_g20088 (HY4, ATCRY1, BLU1, OOP2, CRY1)


Aliases : HY4, ATCRY1, BLU1, OOP2, CRY1

Description : cryptochrome photoreceptor *(CRY) & original description: none


Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g20088
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Ala_g07140 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21204 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g46007 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40468.t1 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008357 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021579.19 ATCRY2, CRY2,... Cryptochrome-1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01009033001 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
LOC_Os04g37920.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species
Lfl_g07997 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428291g0010 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.05 OrthoFinder output from all 47 species
MA_10431129g0010 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 6 160
IPR005101 Cryptochr/Photolyase_FAD-bd 284 478
No external refs found!