Gb_28433

Description : ssRNA polymerase (RDR2)

Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0002293 (LandPlants) Phylogenetic Tree(s): OG_02_0002293_tree ,
OG_03_0004327 (SeedPlants) Phylogenetic Tree(s): OG_03_0004327_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_28433
Cluster	HCCA: Cluster_234

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00088p00026960	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase	0.02	Archaeplastida
GSVIVT01011643001	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01011645001	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
MA_10431382g0020	No alias	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_10435839g0010	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_10436625g0010	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e007872_P002	No alias	ssRNA polymerase (RDR2)	0.02	Archaeplastida
AMTR_s00088p00026960	evm_27.TU.AmTr_v1...	RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase	0.02	LandPlants
AMTR_s00176p00039530	evm_27.TU.AmTr_v1...	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana	0.02	LandPlants
AT4G11130	SMD1, RDR2	RNA-dependent RNA polymerase 2	0.02	LandPlants
MA_10436625g0010	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana...	0.02	LandPlants
MA_10436625g0010	No alias	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	141	720

External Links

No external refs found!