AMTR_s00045p00075400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.65

Description : Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0010885 (SeedPlants) Phylogenetic Tree(s): OG_03_0010885_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00075400
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
GSVIVT01024855001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_14850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 LandPlants
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 LandPlants
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 SeedPlants
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 SeedPlants
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 218
IPR002885 Pentatricopeptide_repeat 22 45
IPR002885 Pentatricopeptide_repeat 225 270
IPR002885 Pentatricopeptide_repeat 116 161
IPR002885 Pentatricopeptide_repeat 292 339
IPR002885 Pentatricopeptide_repeat 50 94
No external refs found!