AMTR_s00044p00219890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.235

Description : ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000159 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000159_tree ,
OG_02_0008460 (LandPlants) Phylogenetic Tree(s): OG_02_0008460_tree ,
OG_03_0008037 (SeedPlants) Phylogenetic Tree(s): OG_03_0008037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00219890
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AT5G13010 EMB3011 RNA helicase family protein 0.02 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Pp3s62_10V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
AT5G10370 No alias helicase domain-containing protein / IBR... 0.02 LandPlants
MA_10436572g0010 No alias no hits & (original description: none) 0.03 LandPlants
AT5G10370 No alias helicase domain-containing protein / IBR... 0.02 SeedPlants
LOC_Os07g42900.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.01 SeedPlants
MA_10436572g0010 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011709 DUF1605 788 863
IPR011545 DEAD/DEAH_box_helicase_dom 241 391
IPR001650 Helicase_C 477 565
IPR007502 Helicase-assoc_dom 626 722
IPR002867 IBR_dom 1579 1626
IPR002867 IBR_dom 1628 1686
No external refs found!