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Pnu_g18818 (CHR5)


Aliases : CHR5

Description : component *(CHR5) of SAGA transcription co-activator complex & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g18818

Target Alias Description ECC score Gene Family Method Actions
Als_g59182 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47130.t1 SYD, CHR3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50700.t1 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Cre08.g377200 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 960 1073
IPR025260 CHD1-like_C 1573 1666
IPR000330 SNF2_N 662 931
IPR023780 Chromo_domain 552 606
No external refs found!