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  5. Gb_27431

Gb_27431


Description : histone demethylase (PKDM7). transcription factor (JUMONJI)


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0001701 (LandPlants) Phylogenetic Tree(s): OG_02_0001701_tree ,
OG_03_0001587 (SeedPlants) Phylogenetic Tree(s): OG_03_0001587_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27431
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
AT2G34880 MEE27, PKDM7C Transcription factor jumonji (jmj) family protein / zinc... 0.02 Archaeplastida
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 Archaeplastida
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 Archaeplastida
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.05 Archaeplastida
Pp3c16_4220V3.1 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.03 Archaeplastida
Pp3c21_10100V3.1 No alias JUMONJI 14 0.02 Archaeplastida
Solyc04g009990.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 Archaeplastida
Zm00001e013363_P002 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.03 Archaeplastida
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 Archaeplastida
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.04 LandPlants
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 LandPlants
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 LandPlants
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 LandPlants
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 LandPlants
Pp3c16_4220V3.1 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.02 LandPlants
Solyc04g009990.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 LandPlants
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.06 LandPlants
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 SeedPlants
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.04 SeedPlants
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 SeedPlants
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 SeedPlants
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 SeedPlants
Solyc04g009990.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 SeedPlants
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.05 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 573 623
IPR003347 JmjC_dom 350 466
IPR003349 JmjN 103 136
IPR003888 FYrich_N 1095 1141
IPR003889 FYrich_C 1148 1234
No external refs found!