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  5. Pnu_g18523

Pnu_g18523


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g18523
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00139140 SAMDC4, BUD2,... Polyamine... 0.02 OrthoFinder output from all 47 species
AT3G25570 No alias Adenosylmethionine decarboxylase family protein 0.03 OrthoFinder output from all 47 species
AT5G18930 SAMDC4, BUD2 Adenosylmethionine decarboxylase family protein 0.04 OrthoFinder output from all 47 species
Ala_g07273 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g35112 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01827 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g62652 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.34G041400.1 SAMDC, Ceric.34G041400 EC_4.1 carbon-carbon lyase & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g17531 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017856001 SAMDC4, BUD2 Polyamine... 0.02 OrthoFinder output from all 47 species
LOC_Os04g42090.3 LOC_Os04g42090 S-adenosyl methionine decarboxylase 0.02 OrthoFinder output from all 47 species
Lfl_g06604 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_123449g0010 No alias S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
MA_726162g0010 SAMDC S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
MA_75633g0020 SAMDC S-adenosyl methionine decarboxylase 0.02 OrthoFinder output from all 47 species
MA_9879049g0010 SAMDC S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Msp_g05405 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27068 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14253 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06446 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19695 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00861 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001985 S-AdoMet_decarboxylase 2 182
IPR022644 De-COase2_N 265 316
No external refs found!