Gb_26718


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 185.0)


Gene families : OG_01_0000364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000364_tree ,
OG_02_0000134 (LandPlants) Phylogenetic Tree(s): OG_02_0000134_tree ,
OG_03_0000108 (SeedPlants) Phylogenetic Tree(s): OG_03_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26718
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_21118 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_25092 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_25323 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_30261 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g06970.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_21118 No alias no hits & (original description: none) 0.05 LandPlants
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_25092 No alias no hits & (original description: none) 0.07 LandPlants
Gb_25323 No alias no hits & (original description: none) 0.1 LandPlants
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_30261 No alias no hits & (original description: none) 0.02 LandPlants
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Mp1g06970.1 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_21118 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_25092 No alias no hits & (original description: none) 0.07 SeedPlants
Gb_25323 No alias no hits & (original description: none) 0.1 SeedPlants
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_30261 No alias no hits & (original description: none) 0.02 SeedPlants
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 200 301
IPR025724 GAG-pre-integrase_dom 134 186
No external refs found!