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  5. Pnu_g17580

Pnu_g17580 (U2AF35B, ATU2AF35B)


Aliases : U2AF35B, ATU2AF35B

Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0001523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g17580
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00118880 U2AF35B,... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Als_g62138 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Ceric.38G006400.1 U2AF35B,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Ceric.39G048700.1 ATU2AF35A,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.08 OrthoFinder output from all 47 species
Ceric.39G058000.1 U2AF35B,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Dcu_g06790 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Gb_08695 U2AF35B, ATU2AF35B Splicing factor U2af small subunit B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_08696 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
Len_g19638 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Lfl_g18692 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Pir_g02167 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.05 OrthoFinder output from all 47 species
Ppi_g05631 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.04 OrthoFinder output from all 47 species
Ppi_g05633 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Solyc10g083640.2.1 U2AF35B,... small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.05 OrthoFinder output from all 47 species
Spa_g13108 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 150 173
IPR000571 Znf_CCCH 14 38
IPR000504 RRM_dom 83 139
No external refs found!