Gb_26073


Description : histone demethylase (KDM5). transcription factor (JUMONJI)


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0005382 (LandPlants) Phylogenetic Tree(s): OG_02_0005382_tree ,
OG_03_0006202 (SeedPlants) Phylogenetic Tree(s): OG_03_0006202_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26073
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
AMTR_s00067p00062020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.06 Archaeplastida
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 Archaeplastida
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 Archaeplastida
LOC_Os05g10770.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
LOC_Os05g23670.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 Archaeplastida
MA_91656g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.02 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 Archaeplastida
Pp3c16_4220V3.1 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.02 Archaeplastida
Solyc06g008490.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 LandPlants
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.05 LandPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 LandPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.02 LandPlants
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.04 LandPlants
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 SeedPlants
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.04 SeedPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 SeedPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.03 SeedPlants
MA_11526g0010 No alias Putative lysine-specific demethylase JMJ16... 0.02 SeedPlants
Solyc08g081000.3.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 653 704
IPR001606 ARID_dom 104 190
IPR019787 Znf_PHD-finger 1758 1819
IPR019787 Znf_PHD-finger 273 320
IPR003347 JmjC_dom 444 560
IPR003349 JmjN 34 67
IPR013637 Lys_sp_deMease-like_dom 1042 1241
IPR013637 Lys_sp_deMease-like_dom 872 1031
IPR013637 Lys_sp_deMease-like_dom 1270 1453
No external refs found!