AMTR_s00044p00102360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.72

Description : Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0011468 (SeedPlants) Phylogenetic Tree(s): OG_03_0011468_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00102360
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Gb_13711 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 Archaeplastida
Gb_32192 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
Gb_32193 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 Archaeplastida
LOC_Os05g30010.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 Archaeplastida
Gb_13711 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 LandPlants
Gb_32192 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 LandPlants
Gb_32193 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 LandPlants
Mp3g09570.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 LandPlants
Gb_13711 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 776 846
No external refs found!