AMTR_s00044p00087550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.60

Description : Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0010121 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010121_tree ,
OG_02_0010541 (LandPlants) Phylogenetic Tree(s): OG_02_0010541_tree ,
OG_03_0010187 (SeedPlants) Phylogenetic Tree(s): OG_03_0010187_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00087550
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.07 Archaeplastida
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.04 Archaeplastida
AT1G13800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 LandPlants
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 LandPlants
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.06 LandPlants
AT1G13800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 SeedPlants
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 SeedPlants
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.05 SeedPlants
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 552 582
IPR002885 Pentatricopeptide_repeat 308 336
IPR002885 Pentatricopeptide_repeat 448 480
IPR002885 Pentatricopeptide_repeat 658 687
IPR002885 Pentatricopeptide_repeat 156 180
IPR002885 Pentatricopeptide_repeat 214 233
IPR002885 Pentatricopeptide_repeat 593 640
IPR002885 Pentatricopeptide_repeat 696 744
IPR002885 Pentatricopeptide_repeat 241 290
IPR002885 Pentatricopeptide_repeat 348 395
IPR002885 Pentatricopeptide_repeat 780 826
IPR002885 Pentatricopeptide_repeat 486 535
No external refs found!