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  5. Pnu_g16856

Pnu_g16856 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16856

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00026960 SMD1, RDR2,... RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.03 OrthoFinder output from all 47 species
AT4G11130 SMD1, RDR2 RNA-dependent RNA polymerase 2 0.02 OrthoFinder output from all 47 species
GSVIVT01007792001 SMD1, RDR2 RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase 0.03 OrthoFinder output from all 47 species
GSVIVT01035851001 SDE1, RDR6, SGS2 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.03 OrthoFinder output from all 47 species
Gb_17277 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Gb_17278 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sam_g09066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 413 997
IPR000504 RRM_dom 37 94
No external refs found!