Pnu_g16591

Description : plastidial RNA splicing factor *(cPTH)) & original description: none

Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g16591

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00230120	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
Adi_g024845	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene49461.t1	Aspi01Gene49461	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g07935	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021244.17	No alias	Chloroplastic group IIB intron splicing facilitator...	0.02	OrthoFinder output from all 47 species
Dde_g14720	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g41554	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01008257001	No alias	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os01g49900.1	LOC_Os01g49900	cPTH plastidial RNA splicing factor	0.03	OrthoFinder output from all 47 species
Lfl_g17164	No alias	plastidial RNA splicing factor *(cPTH)) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001328	Pept_tRNA_hydro	42	223

External Links

No external refs found!