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  5. Als_g62287

Als_g62287 (ATPUB45, PUB45)


Aliases : ATPUB45, PUB45

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0002832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g62287

Target Alias Description ECC score Gene Family Method Actions
AT1G24330 No alias ARM repeat superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g100050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27084 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12229 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G047000.1 ATPUB45, PUB45,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g06119 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18855 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01010374001 No alias U-box domain-containing protein 6 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_24983 ATPUB45, PUB45 U-box domain-containing protein 7 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_40872 ATPUB45, PUB45 U-box domain-containing protein 6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g15193 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33283 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g04138 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06538 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16169 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30427 ATPUB45, PUB45 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10644 ATPUB45, PUB45 E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007747_P003 ATPUB45, PUB45,... U-box domain-containing protein 6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 522 553
IPR003613 Ubox_domain 282 352
No external refs found!