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  5. Als_g62137

Als_g62137 (U2AF35B, ATU2AF35B)


Aliases : U2AF35B, ATU2AF35B

Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex & original description: none


Gene families : OG0001523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g62137
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
AT1G27650 ATU2AF35A U2 snRNP auxiliary factor small subunit, putative 0.02 OrthoFinder output from all 47 species
AT5G42820 U2AF35B, ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
Aev_g08490 ATU2AF35A small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Aob_g00811 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Ceric.39G048700.1 ATU2AF35A,... small subunit of U2AF pre-RNA splicing auxiliary factor... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.61 U2AF35B, ATU2AF35B RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre06.g250950 U2AF35B, ATU2AF35B RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
MA_131998g0010 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 OrthoFinder output from all 47 species
MA_17429g0020 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Mp6g21420.1 U2AF35B, ATU2AF35B small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 OrthoFinder output from all 47 species
Sam_g37082 No alias small subunit of U2AF pre-RNA splicing auxiliary factor... 0.02 OrthoFinder output from all 47 species
Spa_g20926 U2AF35B, ATU2AF35B not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 14 37
IPR000571 Znf_CCCH 150 173
IPR000504 RRM_dom 83 139
No external refs found!