1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g57349

Als_g57349


Description : E3 ubiquitin ligase *(PIRE) & original description: none


Gene families : OG0001463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g57349

Target Alias Description ECC score Gene Family Method Actions
Adi_g008396 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066543 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16420 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11558 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29244 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007838001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g37030.1 LOC_Os02g37030 RING-C2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g11910 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28117 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11625 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15078 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002587 No alias E3 ubiquitin ligase *(PIRE) & original description: CDS=293-1354 0.04 OrthoFinder output from all 47 species
Sam_g16931 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37146 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37903 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!