Als_g56618 (ATX4, SDG16)


Aliases : ATX4, SDG16

Description : class-III histone methyltransferase *(Trx) & original description: none


Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g56618

Target Alias Description ECC score Gene Family Method Actions
AT5G42400 SDG25, ATXR7 SET domain protein 25 0.05 OrthoFinder output from all 47 species
Ala_g11407 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Ala_g11532 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Aob_g23333 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aob_g31865 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene13067.t1 SET29, SDG29,... N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13069.t1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46553.t2 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46555.t1 SET29, SDG29,... N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.04 OrthoFinder output from all 47 species
Aspi01Gene52716.t1 SDG25, ATXR7,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65361.t1 SDG25, ATXR7,... class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene66938.t1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene66942.t1 SET29, SDG29,... N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.03 OrthoFinder output from all 47 species
Cba_g57811 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ceric.01G107400.1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000488.8 SDG25, ATXR7 Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
Cre09.g395584 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre11.g475950 SDG25, ATXR7 Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g07171 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g08323 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g09379 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01038708001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Gb_04139 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11952.1 SET29, SDG29,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species
LOC_Os01g46700.1 ATX4, SDG16,... class III/Trithorax histone methyltransferase component... 0.07 OrthoFinder output from all 47 species
LOC_Os12g41900.1 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species
Len_g14720 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Len_g23260 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g09511 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Lfl_g10001 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g17819 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Mp1g17790.1 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.05 OrthoFinder output from all 47 species
Mp4g21720.1 ATX4, SDG16 class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species
Ore_g05016 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09508 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001119 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Sam_g14051 No alias class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Sam_g14555 No alias class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Smo164635 ATX3, SDG14 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Spa_g47178 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Spa_g55030 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e027986_P003 ATX4, SDG16,... class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species
Zm00001e039307_P005 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 1450 1556
IPR000313 PWWP_dom 851 945
No external refs found!