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  5. Als_g55017

Als_g55017 (GMD1)


Aliases : GMD1

Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0001979 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001979_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g55017
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT3G51160 GMD2, MUR1, MUR_1 NAD(P)-binding Rossmann-fold superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g108238 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01453 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26634 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G056900.1 GMD1, Ceric.34G056900 EC_4.2 carbon-oxygen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g16156 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05300 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01151 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018803001 GMD2, MUR1, MUR_1 Carbohydrate metabolism.nucleotide sugar... 0.02 OrthoFinder output from all 47 species
Gb_28531 GMD1 GDP-D-mannose 4,6-dehydratase (MUR1) 0.05 OrthoFinder output from all 47 species
Len_g03198 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05274 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05950 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g09600.1 GMD2, MUR1, MUR_1 GDP-D-mannose 4,6-dehydratase (MUR1) 0.02 OrthoFinder output from all 47 species
Msp_g01978 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08499 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40840 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06261 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Smo99252 GMD1 Carbohydrate metabolism.nucleotide sugar... 0.04 OrthoFinder output from all 47 species
Spa_g07271 GMD2, MUR1, MUR_1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07272 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15131 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g25547 GMD1 EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 1 115
No external refs found!