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  5. Als_g50820

Als_g50820 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50820

Target Alias Description ECC score Gene Family Method Actions
MA_63194g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_6394g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000001 PUM7, APUM7 not classified & original description: CDS=1-2403 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 856 890
IPR001313 Pumilio_RNA-bd_rpt 714 739
IPR001313 Pumilio_RNA-bd_rpt 896 911
IPR001313 Pumilio_RNA-bd_rpt 673 703
IPR001313 Pumilio_RNA-bd_rpt 823 840
IPR001313 Pumilio_RNA-bd_rpt 749 779
IPR001313 Pumilio_RNA-bd_rpt 638 671
IPR001313 Pumilio_RNA-bd_rpt 784 817
No external refs found!