Als_g50338


Description : not classified & original description: none


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g50338

Target Alias Description ECC score Gene Family Method Actions
Ala_g33840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0017.g014468 No alias not classified & original description: CDS=1-2799 0.03 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g52200.1 LOC_Os04g52200 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 730 805
IPR000504 RRM_dom 409 479
IPR000504 RRM_dom 837 905
IPR000504 RRM_dom 57 125
IPR000504 RRM_dom 606 665
No external refs found!