Gb_23778


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 88.6)


Gene families : OG_01_0001961 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001961_tree ,
OG_02_0001392 (LandPlants) Phylogenetic Tree(s): OG_02_0001392_tree ,
OG_03_0002022 (SeedPlants) Phylogenetic Tree(s): OG_03_0002022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23778
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Gb_00615 No alias no hits & (original description: none) 0.11 Archaeplastida
Gb_01149 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_04494 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_04577 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_05244 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_09057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_19969 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_20124 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_28548 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_30111 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_39166 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_00615 No alias no hits & (original description: none) 0.13 LandPlants
Gb_01149 No alias no hits & (original description: none) 0.09 LandPlants
Gb_04494 No alias no hits & (original description: none) 0.12 LandPlants
Gb_04577 No alias no hits & (original description: none) 0.09 LandPlants
Gb_05244 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 LandPlants
Gb_07068 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_09057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 LandPlants
Gb_19969 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 LandPlants
Gb_20124 No alias no hits & (original description: none) 0.08 LandPlants
Gb_28548 No alias no hits & (original description: none) 0.11 LandPlants
Gb_30111 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_35893 No alias no hits & (original description: none) 0.07 LandPlants
Gb_38102 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_39166 No alias no hits & (original description: none) 0.09 LandPlants
Gb_40075 No alias no hits & (original description: none) 0.06 LandPlants
Gb_00615 No alias no hits & (original description: none) 0.14 SeedPlants
Gb_01149 No alias no hits & (original description: none) 0.09 SeedPlants
Gb_04494 No alias no hits & (original description: none) 0.12 SeedPlants
Gb_04577 No alias no hits & (original description: none) 0.09 SeedPlants
Gb_05244 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 SeedPlants
Gb_09057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 SeedPlants
Gb_19969 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 SeedPlants
Gb_20124 No alias no hits & (original description: none) 0.09 SeedPlants
Gb_28548 No alias no hits & (original description: none) 0.12 SeedPlants
Gb_30111 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_35893 No alias no hits & (original description: none) 0.07 SeedPlants
Gb_38102 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_39166 No alias no hits & (original description: none) 0.09 SeedPlants
Gb_40075 No alias no hits & (original description: none) 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 134 200
No external refs found!