Gb_23453


Description : Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana (sp|q9fje6|pp437_arath : 431.0)


Gene families : OG_01_0017567 (Archaeplastida) Phylogenetic Tree(s): OG_01_0017567_tree ,
OG_02_0017330 (LandPlants) Phylogenetic Tree(s): OG_02_0017330_tree ,
OG_03_0016847 (SeedPlants) Phylogenetic Tree(s): OG_03_0016847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23453
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00041040 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
AMTR_s00099p00041040 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.06 LandPlants
AMTR_s00099p00041040 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 214
IPR002885 Pentatricopeptide_repeat 223 249
IPR002885 Pentatricopeptide_repeat 422 454
IPR002885 Pentatricopeptide_repeat 809 839
IPR002885 Pentatricopeptide_repeat 387 417
IPR002885 Pentatricopeptide_repeat 632 663
IPR002885 Pentatricopeptide_repeat 527 557
IPR002885 Pentatricopeptide_repeat 461 510
IPR002885 Pentatricopeptide_repeat 321 370
IPR002885 Pentatricopeptide_repeat 671 720
IPR002885 Pentatricopeptide_repeat 566 615
IPR002885 Pentatricopeptide_repeat 251 300
IPR002885 Pentatricopeptide_repeat 741 790
No external refs found!